PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246329.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 729aa    MW: 78444.9 Da    PI: 5.9004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246329.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16461507455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  XP_008246329.1 461 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 507
                     6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.58E-17453511No hitNo description
Gene3DG3DSA:4.10.280.102.1E-19454511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-19454516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13461507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MPLSELYRMA GRVDSSQDFE PVNDFVELVW ENGQIMMQGQ SSRTRKSPTC NNSLPSYTPK  60
NRDKDVGNGN IAKTGKFGSV ESVLDEIPLS VPSSEMGLSE DDEILPWLNY SIDEPLHHEY  120
CHEFLPELST VTANEISSNS NLASVDKRSS SSQVYRDSNT NSAHEGAYLE QRNAPKVTSV  180
DGDDVSRPKT GTSQLYPLSS QQSQSLFPSF RSRVSDIVGD NTGSATHPTV CKNSTEVSSA  240
GVFPGIKMQR QDPVMPSNNN SSVVNFSHFS RPAALVKSNL QSIGVVAGSG LSSMERIGNK  300
GKVSAATSNK PPESTLIDSS SGLPKESNSQ CQHITVTSNV ELKPTEAKPL EESCAAKQSE  360
AACQEDASKN DTNTNHIPCE SANRVLRDGE KTLEPVVASS VCSGNSVERA SDDPTHALKR  420
KSRDTDESEC HSDDVEEESV GVKKIAHARG MGSKRSRAAE VHNLSERRRR DRINEKMRAL  480
QELIPNCNKV DKASMLDEAI EYLKTLQLQV QVNLFYHSLV YSSFMLMSKK LDIQLVXXXX  540
XXGMGMGMGM GMGLGMGFGM GMPDMNGGSP SYPMLQVPPM QGAHFPNSPM AGHPAFNGMV  600
GSNLQMFGLP GQGVPMPMQR PPLVPSSGGP FMKSSVGLNA CGAGGPMENA ESAPVSGSKD  660
SVQNMNSQVV QNTNANSSMN QTSSQCQATN EGFGQPALVR KNVQAADVDN NRANRSSNGN  720
DVVLSRTAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465470ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894020.0KP689402.1 Prunus pseudocerasus isolate CL7313.1 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246329.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A0U2RX570.0A0A0U2RX57_9R
STRINGVIT_14s0060g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-46phytochrome interacting factor 3